J3_8BRM_013
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CUC*GAG*CACAAG
- Length
- 12 nucleotides
- Bulged bases
- 8BRM|1|Lt|C|2127
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BRM_013 not in the Motif Atlas
- Homologous match to J3_8C3A_010
- Geometric discrepancy: 0.1146
- The information below is about J3_8C3A_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91491.5
- Basepair signature
- cWW-F-tWW-tHW-cWW-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BRM|1|Lt|C|2088
8BRM|1|Lt|U|2089
8BRM|1|Lt|C|2090
*
8BRM|1|Lt|G|2114
8BRM|1|Lt|A|2115
8BRM|1|Lt|G|2116
*
8BRM|1|Lt|C|2125
8BRM|1|Lt|A|2126
8BRM|1|Lt|C|2127
8BRM|1|Lt|A|2128
8BRM|1|Lt|A|2129
8BRM|1|Lt|G|2130
Current chains
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LE
- 5S ribosomal RNA; 5S rRNA
- Chain LF
- Ribosomal protein L5
- Chain LL
- Ribosomal protein L11
- Chain LU
- Ribosomal protein L21
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