J3_8BRM_016

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

GG*CGGAACU*AGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BRM_016 not in the Motif Atlas

Homologous match to J3_8P9A_068

Geometric discrepancy: 0.1596

The information below is about J3_8P9A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_58657.1

Basepair signature

cWW-cWW-cSW-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8BRM|1|St|G|40
8BRM|1|St|G|41
*
8BRM|1|St|C|346
8BRM|1|St|G|347
8BRM|1|St|G|348
8BRM|1|St|A|349
8BRM|1|St|A|350
8BRM|1|St|C|351
8BRM|1|St|U|352
*
8BRM|1|St|A|377
8BRM|1|St|G|378
8BRM|1|St|C|379

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SK

Ribosomal protein S9

Chain SO

Ribosomal protein S23