J3_8BRM_025

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

UG*CGUC*GACAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BRM_025 not in the Motif Atlas

Geometric match to J3_8C3A_085

Geometric discrepancy: 0.2964

The information below is about J3_8C3A_085

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.2

Basepair signature

cWW-F-F-F-F-tSS-cWW-cWW

Number of instances in this motif group

3

Unit IDs

8BRM|1|St|U|1035
8BRM|1|St|G|1036
*
8BRM|1|St|C|1045
8BRM|1|St|G|1046
8BRM|1|St|U|1047
8BRM|1|St|C|1048
*
8BRM|1|St|G|1060
8BRM|1|St|A|1061
8BRM|1|St|C|1062
8BRM|1|St|A|1063
8BRM|1|St|A|1064

Current chains

Chain St

Small Subunit rRNA

Nearby chains

Chain SA

Ribosomal protein SA

Chain SB

Ribosomal protein S2

Chain SU

Ribosomal protein S17