J3_8BRM_029
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CUCG*CGAUAGCGGACCAAGUAG*CGAACG
- Length
- 28 nucleotides
- Bulged bases
- 8BRM|1|LD|C|24, 8BRM|1|Lt|U|294, 8BRM|1|Lt|C|302, 8BRM|1|Lt|A|303
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BRM_029 not in the Motif Atlas
- Geometric match to J3_5J7L_067
- Geometric discrepancy: 0.0905
- The information below is about J3_5J7L_067
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_30040.2
- Basepair signature
- cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F
- Number of instances in this motif group
- 7
Unit IDs
8BRM|1|LD|C|22
8BRM|1|LD|U|23
8BRM|1|LD|C|24
8BRM|1|LD|G|25
*
8BRM|1|Lt|C|291
8BRM|1|Lt|G|292
8BRM|1|Lt|A|293
8BRM|1|Lt|U|294
8BRM|1|Lt|A|295
8BRM|1|Lt|G|296
8BRM|1|Lt|C|297
8BRM|1|Lt|G|298
8BRM|1|Lt|G|299
8BRM|1|Lt|A|300
8BRM|1|Lt|C|301
8BRM|1|Lt|C|302
8BRM|1|Lt|A|303
8BRM|1|Lt|A|304
8BRM|1|Lt|G|305
8BRM|1|Lt|U|306
8BRM|1|Lt|A|307
8BRM|1|Lt|G|308
*
8BRM|1|Lt|C|315
8BRM|1|Lt|G|316
8BRM|1|Lt|A|317
8BRM|1|Lt|A|318
8BRM|1|Lt|C|319
8BRM|1|Lt|G|320
Current chains
- Chain LD
- 5.8S rRNA
- Chain Lt
- Large Subunit rRNA
Nearby chains
- Chain LC
- Ribosomal protein L4
- Chain LG
- Ribosomal protein L39
- Chain LZ
- Ribosomal protein L26
- Chain Lk
- Ribosomal protein L37
Coloring options: