J3_8BRM_033

3D structure

PDB id

8BRM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Giardia ribosome in POST-T state, no E-site tRNA (A6)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.33 Å

Loop

Sequence

CGACG*CC*GAAAAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BRM_033 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.1087

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

8BRM|1|Lt|C|1320
8BRM|1|Lt|G|1321
8BRM|1|Lt|A|1322
8BRM|1|Lt|C|1323
8BRM|1|Lt|G|1324
*
8BRM|1|Lt|C|1434
8BRM|1|Lt|C|1435
*
8BRM|1|Lt|G|1439
8BRM|1|Lt|A|1440
8BRM|1|Lt|A|1441
8BRM|1|Lt|A|1442
8BRM|1|Lt|A|1443
8BRM|1|Lt|G|1444

Current chains

Chain Lt

Large Subunit rRNA

Nearby chains

Chain LA

Ribosomal protein L2

Chain Lh

Ribosomal protein L34

Chain Lq

Ribosomal protein L37a