J3_8BRM_038
3D structure
- PDB id
- 8BRM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Giardia ribosome in POST-T state, no E-site tRNA (A6)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.33 Å
Loop
- Sequence
- CCAUCC*GG*UG
- Length
- 10 nucleotides
- Bulged bases
- 8BRM|1|LE|U|12
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BRM_038 not in the Motif Atlas
- Homologous match to J3_8P9A_066
- Geometric discrepancy: 0.1734
- The information below is about J3_8P9A_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_26985.1
- Basepair signature
- cWW-F-cWW-tSS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
8BRM|1|LE|C|9
8BRM|1|LE|C|10
8BRM|1|LE|A|11
8BRM|1|LE|U|12
8BRM|1|LE|C|13
8BRM|1|LE|C|14
*
8BRM|1|LE|G|66
8BRM|1|LE|G|67
*
8BRM|1|LE|U|110
8BRM|1|LE|G|111
Current chains
- Chain LE
- 5S rRNA
Nearby chains
- Chain LF
- Ribosomal protein L5
- Chain LK
- Ribosomal protein L10
- Chain LU
- Ribosomal protein L21
- Chain Lt
- Large subunit ribosomal RNA; LSU rRNA
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