J3_8BTK_003

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

8BTK|1|A2|C|1139

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BTK|1|A2|C|1095
8BTK|1|A2|U|1096
8BTK|1|A2|G|1097
*
8BTK|1|A2|U|1137
8BTK|1|A2|U|1138
8BTK|1|A2|C|1139
8BTK|1|A2|C|1140
8BTK|1|A2|G|1141
*
8BTK|1|A2|C|1148
8BTK|1|A2|A|1149
8BTK|1|A2|A|1150
8BTK|1|A2|A|1151
8BTK|1|A2|G|1152

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AA

40S ribosomal protein S27

Chain AE

eS26

Chain AZ

40S ribosomal protein SA

Chain Au

40S ribosomal protein S21

Chain Av

Ribosomal protein S15a