J3_8BTK_013

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAG*CG(PSU)AG*UCCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BTK_013 not in the Motif Atlas

Homologous match to J3_8C3A_004

Geometric discrepancy: 0.2588

The information below is about J3_8C3A_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_44724.5

Basepair signature

cWW-tSH-F-cWW-tHS-cWW-F

Number of instances in this motif group

6

Unit IDs

8BTK|1|B5|C|1501
8BTK|1|B5|A|1502
8BTK|1|B5|G|1503
*
8BTK|1|B5|C|1535
8BTK|1|B5|G|1536
8BTK|1|B5|PSU|1537
8BTK|1|B5|A|1538
8BTK|1|B5|G|1539
*
8BTK|1|B5|U|1564
8BTK|1|B5|C|1565
8BTK|1|B5|C|1566
8BTK|1|B5|G|1567

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

60S ribosomal protein L8

Chain BR

60S ribosomal protein L19

Chain Bp

eL43