J3_8BTK_015

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAGUG*CAA*UCUG

Length

14 nucleotides

Bulged bases

8BTK|1|B5|A|2239

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BTK_015 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.1072

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8BTK|1|B5|C|2236
8BTK|1|B5|G|2237
8BTK|1|B5|A|2238
8BTK|1|B5|A|2239
8BTK|1|B5|G|2240
8BTK|1|B5|U|2241
8BTK|1|B5|G|2242
*
8BTK|1|B5|C|2648
8BTK|1|B5|A|2649
8BTK|1|B5|A|2650
*
8BTK|1|B5|U|2662
8BTK|1|B5|C|2663
8BTK|1|B5|U|2664
8BTK|1|B5|G|2665

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BR

60S ribosomal protein L19

Chain Bg

60S ribosomal protein L34