J3_8BTK_017

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

8BTK|1|B5|U|2606

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BTK|1|B5|A|2394
8BTK|1|B5|G|2395
8BTK|1|B5|A|2396
8BTK|1|B5|U|2397
8BTK|1|B5|G|2398
*
8BTK|1|B5|C|2415
8BTK|1|B5|A|2416
8BTK|1|B5|G|2417
8BTK|1|B5|U|2418
*
8BTK|1|B5|A|2600
8BTK|1|B5|G|2601
8BTK|1|B5|G|2602
8BTK|1|B5|G|2603
8BTK|1|B5|U|2604
8BTK|1|B5|G|2605
8BTK|1|B5|U|2606
8BTK|1|B5|A|2607
8BTK|1|B5|A|2608
8BTK|1|B5|A|2609
8BTK|1|B5|U|2610

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BZ

60S ribosomal protein L27

Chain TC

Signal sequence receptor subunit 3