J3_8BTK_018

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGG*CUGAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BTK_018 not in the Motif Atlas

Geometric match to J3_8VTW_006

Geometric discrepancy: 0.143

The information below is about J3_8VTW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_89368.4

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8BTK|1|B5|C|3669
8BTK|1|B5|G|3670
8BTK|1|B5|G|3671
*
8BTK|1|B5|C|3802
8BTK|1|B5|U|3803
8BTK|1|B5|G|3804
8BTK|1|B5|A|3805
8BTK|1|B5|C|3806
*
8BTK|1|B5|G|3914
8BTK|1|B5|G|3915
8BTK|1|B5|A|3916
8BTK|1|B5|C|3917
8BTK|1|B5|A|3918
8BTK|1|B5|G|3919

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

60S ribosomal protein L8

Chain BG

60S ribosomal protein L7a

Chain BN

Ribosomal protein L15