J3_8BTK_030
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- UUCUUAG*CGAGAC*GCAAUAA
- Length
- 20 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BTK_030 not in the Motif Atlas
- Homologous match to J3_8C3A_042
- Geometric discrepancy: 0.244
- The information below is about J3_8C3A_042
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_67213.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8BTK|1|A2|U|1340
8BTK|1|A2|U|1341
8BTK|1|A2|C|1342
8BTK|1|A2|U|1343
8BTK|1|A2|U|1344
8BTK|1|A2|A|1345
8BTK|1|A2|G|1346
*
8BTK|1|A2|C|1385
8BTK|1|A2|G|1386
8BTK|1|A2|A|1387
8BTK|1|A2|G|1388
8BTK|1|A2|A|1389
8BTK|1|A2|C|1390
*
8BTK|1|A2|G|1482
8BTK|1|A2|C|1483
8BTK|1|A2|A|1484
8BTK|1|A2|A|1485
8BTK|1|A2|U|1486
8BTK|1|A2|A|1487
8BTK|1|A2|A|1488
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain AG
- uS14
- Chain Ab
- Ribosomal_S5_C domain-containing protein,40S ribosomal protein S2
- Chain Ac
- 40S ribosomal protein S3
- Chain Ap
- uS9
- Chain Aq
- 40S ribosomal protein eS17
- Chain At
- 40S ribosomal protein uS10
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