J3_8BTK_031

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UG*UGUC*GAUAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BTK_031 not in the Motif Atlas

Homologous match to J3_8P9A_081

Geometric discrepancy: 0.1155

The information below is about J3_8P9A_081

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_76043.4

Basepair signature

cWW-cWW-tSS-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8BTK|1|A2|U|1351
8BTK|1|A2|G|1352
*
8BTK|1|A2|U|1361
8BTK|1|A2|G|1362
8BTK|1|A2|U|1363
8BTK|1|A2|C|1364
*
8BTK|1|A2|G|1376
8BTK|1|A2|A|1377
8BTK|1|A2|U|1378
8BTK|1|A2|A|1379
8BTK|1|A2|A|1380

Current chains

Chain A2

18S rRNA

Nearby chains

Chain AZ

40S ribosomal protein SA

Chain Ab

Ribosomal_S5_C domain-containing protein,40S ribosomal protein S2

Chain Aq

40S ribosomal protein eS17