J3_8BTK_041

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGAAG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BTK_041 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.148

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_08594.1

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

6

Unit IDs

8BTK|1|B5|A|2441
8BTK|1|B5|G|2442
8BTK|1|B5|A|2443
8BTK|1|B5|A|2444
8BTK|1|B5|G|2445
*
8BTK|1|B5|C|2580
8BTK|1|B5|C|2581
*
8BTK|1|B5|G|2585
8BTK|1|B5|A|2586
8BTK|1|B5|A|2587
8BTK|1|B5|A|2588
8BTK|1|B5|A|2589
8BTK|1|B5|U|2590

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BA

60S ribosomal protein L8

Chain Bg

60S ribosomal protein L34

Chain Bp

eL43