J3_8BTK_043

3D structure

PDB id

8BTK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the TRAP complex with the Sec translocon and a translating ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUUG*CCUUC*GCACCGCACGUUC

Length

22 nucleotides

Bulged bases

8BTK|1|B5|U|4621, 8BTK|1|B5|A|4677, 8BTK|1|B5|C|4679, 8BTK|1|B5|A|4682, 8BTK|1|B5|C|4683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8BTK|1|B5|G|4498
8BTK|1|B5|U|4499
8BTK|1|B5|U|4500
8BTK|1|B5|G|4501
*
8BTK|1|B5|C|4618
8BTK|1|B5|C|4619
8BTK|1|B5|U|4620
8BTK|1|B5|U|4621
8BTK|1|B5|C|4622
*
8BTK|1|B5|G|4675
8BTK|1|B5|C|4676
8BTK|1|B5|A|4677
8BTK|1|B5|C|4678
8BTK|1|B5|C|4679
8BTK|1|B5|G|4680
8BTK|1|B5|C|4681
8BTK|1|B5|A|4682
8BTK|1|B5|C|4683
8BTK|1|B5|G|4684
8BTK|1|B5|U|4685
8BTK|1|B5|U|4686
8BTK|1|B5|C|4687

Current chains

Chain B5

28S rRNA

Nearby chains

Chain BE

60S ribosomal protein L6

Chain BM

Ribosomal protein L14

Chain BO

60S ribosomal protein L13a

Chain Bf

60S ribosomal protein L35a