J3_8BTK_046
3D structure
- PDB id
- 8BTK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the TRAP complex with the Sec translocon and a translating ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAC*GCUAAGG*CAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BTK_046 not in the Motif Atlas
- Homologous match to J3_8CRE_012
- Geometric discrepancy: 0.2534
- The information below is about J3_8CRE_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_28621.5
- Basepair signature
- cWW-tSS-cSS-tSH-cWW-cWW-tWW-F-F
- Number of instances in this motif group
- 7
Unit IDs
8BTK|1|B5|G|1908
8BTK|1|B5|A|1909
8BTK|1|B5|C|1910
*
8BTK|1|B5|G|1934
8BTK|1|B5|C|1935
8BTK|1|B5|U|1936
8BTK|1|B5|A|1937
8BTK|1|B5|A|1938
8BTK|1|B5|G|1939
8BTK|1|B5|G|1940
*
8BTK|1|B5|C|1955
8BTK|1|B5|A|1956
8BTK|1|B5|C|1957
Current chains
- Chain B5
- 28S rRNA
Nearby chains
- Chain Bs
- 60S acidic ribosomal protein P0
- Chain Bt
- Ribosomal protein L12
Coloring options: