J3_8BUU_001

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GC*GUGAAAAG*CC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BUU_001 not in the Motif Atlas

Homologous match to J3_7A0S_001

Geometric discrepancy: 0.103

The information below is about J3_7A0S_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_68715.1

Basepair signature

cWW-tWH-cWW-tSH-F-cWW-F

Number of instances in this motif group

10

Unit IDs

8BUU|1|A|G|30
8BUU|1|A|C|31
*
8BUU|1|A|G|521
8BUU|1|A|U|522
8BUU|1|A|G|523
8BUU|1|A|A|524
8BUU|1|A|A|525
8BUU|1|A|A|526
8BUU|1|A|A|527
8BUU|1|A|G|528
*
8BUU|1|A|C|555
8BUU|1|A|C|556

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L20

Chain U

50S ribosomal protein L24