J3_8BUU_008

3D structure

PDB id

8BUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

ARE-ABCF VmlR2 bound to a 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UCGGGAC*GACAA*UA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8BUU_008 not in the Motif Atlas

Homologous match to J3_7RQB_009

Geometric discrepancy: 0.134

The information below is about J3_7RQB_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_04858.2

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW

Number of instances in this motif group

3

Unit IDs

8BUU|1|A|U|1383
8BUU|1|A|C|1384
8BUU|1|A|G|1385
8BUU|1|A|G|1386
8BUU|1|A|G|1387
8BUU|1|A|A|1388
8BUU|1|A|C|1389
*
8BUU|1|A|G|1420
8BUU|1|A|A|1421
8BUU|1|A|C|1422
8BUU|1|A|A|1423
8BUU|1|A|A|1424
*
8BUU|1|A|U|1441
8BUU|1|A|A|1442

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23