J3_8BUU_012
3D structure
- PDB id
- 8BUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- ARE-ABCF VmlR2 bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAU*AGUAAG*CGAGG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BUU_012 not in the Motif Atlas
- Homologous match to J3_7A0S_012
- Geometric discrepancy: 0.1951
- The information below is about J3_7A0S_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_20574.1
- Basepair signature
- cWW-F-F-tWH-cWW-tSS-F-tHS-F-cWW
- Number of instances in this motif group
- 1
Unit IDs
8BUU|1|A|C|2818
8BUU|1|A|A|2819
8BUU|1|A|U|2820
*
8BUU|1|A|A|2831
8BUU|1|A|G|2832
8BUU|1|A|U|2833
8BUU|1|A|A|2834
8BUU|1|A|A|2835
8BUU|1|A|G|2836
*
8BUU|1|A|C|2914
8BUU|1|A|G|2915
8BUU|1|A|A|2916
8BUU|1|A|G|2917
8BUU|1|A|G|2918
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain D
- 50S ribosomal protein L3
Coloring options: