J3_8BUU_019
3D structure
- PDB id
- 8BUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- ARE-ABCF VmlR2 bound to a 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAAG*CUAGUAA*UGAAUACG
- Length
- 19 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BUU_019 not in the Motif Atlas
- Homologous match to J3_4LFB_002
- Geometric discrepancy: 0.0916
- The information below is about J3_4LFB_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_85722.1
- Basepair signature
- cWW-F-F-cSS-F-cWW-tHH-tWW-F-tWH-tHS-cSH-cWW
- Number of instances in this motif group
- 5
Unit IDs
8BUU|1|a|C|946
8BUU|1|a|A|947
8BUU|1|a|A|948
8BUU|1|a|G|949
*
8BUU|1|a|C|1353
8BUU|1|a|U|1354
8BUU|1|a|A|1355
8BUU|1|a|G|1356
8BUU|1|a|U|1357
8BUU|1|a|A|1358
8BUU|1|a|A|1359
*
8BUU|1|a|U|1381
8BUU|1|a|G|1382
8BUU|1|a|A|1383
8BUU|1|a|A|1384
8BUU|1|a|U|1385
8BUU|1|a|A|1386
8BUU|1|a|C|1387
8BUU|1|a|G|1388
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain g
- 30S ribosomal protein S7
- Chain i
- 30S ribosomal protein S9
Coloring options: