J3_8BYV_016
3D structure
- PDB id
- 8BYV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of a Staphylococus aureus 30S-RbfA complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.89 Å
Loop
- Sequence
- GUUUAAUUC*GAAGAACCUUACC*GGGCUAC
- Length
- 29 nucleotides
- Bulged bases
- 8BYV|1|a|A|985, 8BYV|1|a|G|986, 8BYV|1|a|A|988, 8BYV|1|a|A|1236
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8BYV_016 not in the Motif Atlas
- Homologous match to J3_6CZR_020
- Geometric discrepancy: 0.2534
- The information below is about J3_6CZR_020
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86907.1
- Basepair signature
- cWW-F-F-F-tSW-F-tSH-tSS-F-F-F-F-F-F-F-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8BYV|1|a|G|964
8BYV|1|a|U|965
8BYV|1|a|U|966
8BYV|1|a|U|967
8BYV|1|a|A|968
8BYV|1|a|A|969
8BYV|1|a|U|970
8BYV|1|a|U|971
8BYV|1|a|C|972
*
8BYV|1|a|G|983
8BYV|1|a|A|984
8BYV|1|a|A|985
8BYV|1|a|G|986
8BYV|1|a|A|987
8BYV|1|a|A|988
8BYV|1|a|C|989
8BYV|1|a|C|990
8BYV|1|a|U|991
8BYV|1|a|U|992
8BYV|1|a|A|993
8BYV|1|a|C|994
8BYV|1|a|C|995
*
8BYV|1|a|G|1231
8BYV|1|a|G|1232
8BYV|1|a|G|1233
8BYV|1|a|C|1234
8BYV|1|a|U|1235
8BYV|1|a|A|1236
8BYV|1|a|C|1237
Current chains
- Chain a
- 16S ribosomal RNA
Nearby chains
- Chain j
- 30S ribosomal protein S10
- Chain m
- 30S ribosomal protein S13
- Chain n
- 30S ribosomal protein S14 type Z
- Chain s
- 30S ribosomal protein S19
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