J3_8C01_007

3D structure

PDB id

8C01 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Enp1TAP_A population of yeast small ribosomal subunit precursors

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGGA*UAC*GGAA

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8C01_007 not in the Motif Atlas

Homologous match to J3_4V88_036

Geometric discrepancy: 0.1418

The information below is about J3_4V88_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.2

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8C01|1|2|U|1168
8C01|1|2|G|1169
8C01|1|2|G|1170
8C01|1|2|A|1171
*
8C01|1|2|U|1468
8C01|1|2|A|1469
8C01|1|2|C|1470
*
8C01|1|2|G|1574
8C01|1|2|G|1575
8C01|1|2|A|1576
8C01|1|2|A|1577

Current chains

Chain 2

18S rRNA precursor

Nearby chains

Chain B

40S ribosomal protein S5

Chain I

40S ribosomal protein S19-A

Chain r

Serine/threonine-protein kinase RIO2