J3_8C3A_002

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

AGAC*GGG*CAUAAU

Length

13 nucleotides

Bulged bases

8C3A|1|1|U|618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_50081.1

Basepair signature

cWW-cSS-cWW-tSS-cWW-F-cWW-F

Number of instances in this motif group

1

Unit IDs

8C3A|1|1|A|436
8C3A|1|1|G|437
8C3A|1|1|A|438
8C3A|1|1|C|439
*
8C3A|1|1|G|488
8C3A|1|1|G|489
8C3A|1|1|G|490
*
8C3A|1|1|C|616
8C3A|1|1|A|617
8C3A|1|1|U|618
8C3A|1|1|A|619
8C3A|1|1|A|620
8C3A|1|1|U|621

Current chains

Chain 1

25S

Nearby chains

Chain AF

60S ribosomal protein L32

Chain AG

60S ribosomal protein L33-A

Chain x

Ribosomal protein L22