J3_8C3A_052

3D structure

PDB id

8C3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of ailanthone bound to the Candida albicans 80S ribosome

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

UCGAUC*GGAAU*AA

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_70383.1

Basepair signature

cWW-F-cWW-F-F-F-F-F-cWW-F

Number of instances in this motif group

6

Unit IDs

8C3A|1|1|U|1522
8C3A|1|1|C|1523
8C3A|1|1|G|1524
8C3A|1|1|A|1525
8C3A|1|1|U|1526
8C3A|1|1|C|1527
*
8C3A|1|1|G|1587
8C3A|1|1|G|1588
8C3A|1|1|A|1589
8C3A|1|1|A|1590
8C3A|1|1|U|1591
*
8C3A|1|1|A|1608
8C3A|1|1|A|1609

Current chains

Chain 1

25S

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain 8

60S ribosomal protein L25

Chain AH

60S ribosomal protein L34-B

Chain AL

60S ribosomal protein L38

Chain AM

60S ribosomal protein L39