Loop J3_8C3A

3D structure

PDB id: 8C3A (explore in PDB, NAKB, or RNA 3D Hub)
Description: Crystal structure of ailanthone bound to the Candida albicans 80S ribosome
Experimental method: X-RAY DIFFRACTION
Resolution: 3 Å

Loop

Sequence: UUUUAGAUG*CAUAGCAGG*CGGAUAGCAAUGUCAACA
Length: 36 nucleotides
Bulged bases: 8C3A|1|AS|A|3142, 8C3A|1|AS|G|3143, 8C3A|1|AS|A|3180, 8C3A|1|AS|G|3181, 8C3A|1|AS|C|3182, 8C3A|1|AS|G|3184, 8C3A|1|AS|A|3233, 8C3A|1|AS|A|3235, 8C3A|1|AS|C|3237
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8C3A|1|AS|U|3138
8C3A|1|AS|U|3139
8C3A|1|AS|U|3140
8C3A|1|AS|U|3141
8C3A|1|AS|A|3142
8C3A|1|AS|G|3143
8C3A|1|AS|A|3144
8C3A|1|AS|U|3145
8C3A|1|AS|G|3146
*
8C3A|1|AS|C|3177
8C3A|1|AS|A|3178
8C3A|1|AS|U|3179
8C3A|1|AS|A|3180
8C3A|1|AS|G|3181
8C3A|1|AS|C|3182
8C3A|1|AS|A|3183
8C3A|1|AS|G|3184
8C3A|1|AS|G|3185
*
8C3A|1|AS|C|3230
8C3A|1|AS|G|3231
8C3A|1|AS|G|3232
8C3A|1|AS|A|3233
8C3A|1|AS|U|3234
8C3A|1|AS|A|3235
8C3A|1|AS|G|3236
8C3A|1|AS|C|3237
8C3A|1|AS|A|3238
8C3A|1|AS|A|3239
8C3A|1|AS|U|3240
8C3A|1|AS|G|3241
8C3A|1|AS|U|3242
8C3A|1|AS|C|3243
8C3A|1|AS|A|3244
8C3A|1|AS|A|3245
8C3A|1|AS|C|3246
8C3A|1|AS|A|3247

Current chains

Chain AS: 25S

Nearby chains

Chain BA: 60S ribosomal protein L6
Chain BH: 60S ribosomal protein L14-B
Chain BJ: Ribosomal protein L13
Chain BK: Ribosomal protein L22
Chain CA: 60S ribosomal protein L33-A

J3_8C3A_073