J3_8C6J_001
3D structure
- PDB id
- 8C6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human spliceosomal PM5 C* complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- GGCCUUUUGG*CAU*ACGCAAAUUC
- Length
- 23 nucleotides
- Bulged bases
- 8C6J|1|2|U|15, 8C6J|1|2|U|17, 8C6J|1|2|U|18, 8C6J|1|6|C|79, 8C6J|1|6|C|81, 8C6J|1|6|A|84, 8C6J|1|6|U|85, 8C6J|1|6|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8C6J|1|2|G|11
8C6J|1|2|G|12
8C6J|1|2|C|13
8C6J|1|2|C|14
8C6J|1|2|U|15
8C6J|1|2|U|16
8C6J|1|2|U|17
8C6J|1|2|U|18
8C6J|1|2|G|19
8C6J|1|2|G|20
*
8C6J|1|6|C|55
8C6J|1|6|A|56
8C6J|1|6|U|57
*
8C6J|1|6|A|78
8C6J|1|6|C|79
8C6J|1|6|G|80
8C6J|1|6|C|81
8C6J|1|6|A|82
8C6J|1|6|A|83
8C6J|1|6|A|84
8C6J|1|6|U|85
8C6J|1|6|U|86
8C6J|1|6|C|87
Current chains
- Chain 2
- U2 snRNA
- Chain 6
- U6 snRNA
Nearby chains
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain E
- PM5 5' Exon
- Chain I
- PM5 Intron
- Chain J
- Pleiotropic regulator 1
- Chain K
- SNW domain-containing protein 1
- Chain O
- Cell division cycle 5-like protein
- Chain P
- Spliceosome-associated protein CWC15 homolog
- Chain S
- Crooked neck-like protein 1
- Chain y
- Pre-mRNA-splicing factor SYF2
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