3D structure

PDB id
8C8Z (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM captures early ribosome assembly in action
Experimental method
ELECTRON MICROSCOPY
Resolution
3.12 Å

Loop

Sequence
CUG*CUAAC*GGACAG
Length
14 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8C8Z_006 not in the Motif Atlas
Homologous match to J3_5J7L_044
Geometric discrepancy: 0.3856
The information below is about J3_5J7L_044
Detailed Annotation
Kink-turn in J3
Broad Annotation
No text annotation
Motif group
J3_89368.5
Basepair signature
cWW-tSH-tHW-F-cWW-tHH-cWW
Number of instances in this motif group
3

Unit IDs

8C8Z|1|A|C|2091
8C8Z|1|A|U|2092
8C8Z|1|A|G|2093
*
8C8Z|1|A|C|2196
8C8Z|1|A|U|2197
8C8Z|1|A|A|2198
8C8Z|1|A|A|2199
8C8Z|1|A|C|2200
*
8C8Z|1|A|G|2223
8C8Z|1|A|G|2224
8C8Z|1|A|A|2225
8C8Z|1|A|C|2226
8C8Z|1|A|A|2227
8C8Z|1|A|G|2228

Current chains

Chain A
23S rRNA

Nearby chains

Chain H
50S ribosomal protein L9
Chain X
50S ribosomal protein L28

Coloring options:


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