J3_8C8Z_006

3D structure

PDB id

8C8Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.12 Å

Loop

Sequence

CUG*CUAAC*GGACAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8C8Z_006 not in the Motif Atlas

Homologous match to J3_5J7L_044

Geometric discrepancy: 0.3856

The information below is about J3_5J7L_044

Detailed Annotation

Kink-turn in J3

Broad Annotation

No text annotation

Motif group

J3_89368.5

Basepair signature

cWW-tSH-tHW-F-cWW-tHH-cWW

Number of instances in this motif group

3

Unit IDs

8C8Z|1|A|C|2091
8C8Z|1|A|U|2092
8C8Z|1|A|G|2093
*
8C8Z|1|A|C|2196
8C8Z|1|A|U|2197
8C8Z|1|A|A|2198
8C8Z|1|A|A|2199
8C8Z|1|A|C|2200
*
8C8Z|1|A|G|2223
8C8Z|1|A|G|2224
8C8Z|1|A|A|2225
8C8Z|1|A|C|2226
8C8Z|1|A|A|2227
8C8Z|1|A|G|2228

Current chains

Chain A

23S rRNA

Nearby chains

Chain H

50S ribosomal protein L9

Chain X

50S ribosomal protein L28