J3_8C91_003

3D structure

PDB id

8C91 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

4.19 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8C91|1|A|U|686, 8C91|1|A|A|792, 8C91|1|A|A|793

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8C91_003 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.2029

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8C91|1|A|U|683
8C91|1|A|G|684
8C91|1|A|A|685
8C91|1|A|U|686
8C91|1|A|C|687
8C91|1|A|U|688
8C91|1|A|A|689
*
8C91|1|A|U|773
8C91|1|A|G|774
8C91|1|A|G|775
*
8C91|1|A|C|791
8C91|1|A|A|792
8C91|1|A|A|793
8C91|1|A|A|794

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34