J3_8C94_004

3D structure

PDB id

8C94 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM captures early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCA*UCAUAGUGAUCC*GCUCAAC

Length

22 nucleotides

Bulged bases

8C94|1|A|A|2426

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8C94_004 not in the Motif Atlas

Homologous match to J3_9DFE_015

Geometric discrepancy: 0.305

The information below is about J3_9DFE_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_20992.1

Basepair signature

cWW-F-F-cWW-tHW-tHW-F-cWW-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8C94|1|A|G|2282
8C94|1|A|C|2283
8C94|1|A|A|2284
*
8C94|1|A|U|2384
8C94|1|A|C|2385
8C94|1|A|A|2386
8C94|1|A|U|2387
8C94|1|A|A|2388
8C94|1|A|G|2389
8C94|1|A|U|2390
8C94|1|A|G|2391
8C94|1|A|A|2392
8C94|1|A|U|2393
8C94|1|A|C|2394
8C94|1|A|C|2395
*
8C94|1|A|G|2421
8C94|1|A|C|2422
8C94|1|A|U|2423
8C94|1|A|C|2424
8C94|1|A|A|2425
8C94|1|A|A|2426
8C94|1|A|C|2427

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L27