J3_8C99_003

3D structure

PDB id

8C99 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time limited cryo-EM reveals early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

CCUG*CGAUAGUGAACCAGUAC*GGAAAG

Length

27 nucleotides

Bulged bases

8C99|1|A|U|34, 8C99|1|A|U|448, 8C99|1|A|C|456

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8C99_003 not in the Motif Atlas

Homologous match to J3_5J7L_067

Geometric discrepancy: 0.1157

The information below is about J3_5J7L_067

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_30040.2

Basepair signature

cWW-tWH-F-cWW-tSS-tHH-cSS-tWH-tSW-tHS-cWW-tWH-F-cSH-tSS-F-F

Number of instances in this motif group

7

Unit IDs

8C99|1|A|C|32
8C99|1|A|C|33
8C99|1|A|U|34
8C99|1|A|G|35
*
8C99|1|A|C|445
8C99|1|A|G|446
8C99|1|A|A|447
8C99|1|A|U|448
8C99|1|A|A|449
8C99|1|A|G|450
8C99|1|A|U|451
8C99|1|A|G|452
8C99|1|A|A|453
8C99|1|A|A|454
8C99|1|A|C|455
8C99|1|A|C|456
8C99|1|A|A|457
8C99|1|A|G|458
8C99|1|A|U|459
8C99|1|A|A|460
8C99|1|A|C|461
*
8C99|1|A|G|468
8C99|1|A|G|469
8C99|1|A|A|470
8C99|1|A|A|471
8C99|1|A|A|472
8C99|1|A|G|473

Current chains

Chain A

23S rRNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain E

50S ribosomal protein L4

Chain Q

50S ribosomal protein L20