J3_8C9B_004

3D structure

PDB id

8C9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time limited cryo-EM reveals early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

5.9 Å

Loop

Sequence

CAAG*CGAAG*CGAAG

Length

14 nucleotides

Bulged bases

8C9B|1|A|A|654

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8C9B|1|A|C|601
8C9B|1|A|A|602
8C9B|1|A|A|603
8C9B|1|A|G|604
*
8C9B|1|A|C|624
8C9B|1|A|G|625
8C9B|1|A|A|626
8C9B|1|A|A|627
8C9B|1|A|G|628
*
8C9B|1|A|C|635
8C9B|1|A|G|636
8C9B|1|A|A|654
8C9B|1|A|A|655
8C9B|1|A|G|656

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4