J3_8C9B_005

3D structure

PDB id

8C9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Time limited cryo-EM reveals early ribosome assembly in action

Experimental method

ELECTRON MICROSCOPY

Resolution

5.9 Å

Loop

Sequence

GGAAG*CGCGAUACAG*CGUAC

Length

20 nucleotides

Bulged bases

8C9B|1|A|U|321

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8C9B_005 not in the Motif Atlas

Homologous match to J3_5J7L_068

Geometric discrepancy: 0.1304

The information below is about J3_5J7L_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_46299.2

Basepair signature

cWW-F-F-F-cHH-cWW-tHS-F-cWW-cSW-tHS-cWW

Number of instances in this motif group

3

Unit IDs

8C9B|1|A|G|297
8C9B|1|A|G|298
8C9B|1|A|A|299
8C9B|1|A|A|300
8C9B|1|A|G|301
*
8C9B|1|A|C|316
8C9B|1|A|G|317
8C9B|1|A|C|318
8C9B|1|A|G|319
8C9B|1|A|A|320
8C9B|1|A|U|321
8C9B|1|A|A|322
8C9B|1|A|C|323
8C9B|1|A|A|324
8C9B|1|A|G|325
*
8C9B|1|A|C|337
8C9B|1|A|G|338
8C9B|1|A|U|339
8C9B|1|A|A|340
8C9B|1|A|C|341

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain U

50S ribosomal protein L24