3D structure

PDB id
8CA7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Omadacycline and spectinomycin bound to the 30S ribosomal subunit head
Experimental method
ELECTRON MICROSCOPY
Resolution
2.06 Å

Loop

Sequence
CAAUG*CGUAGUCC*GUCG
Length
17 nucleotides
Bulged bases
8CA7|1|A|U|1240, 8CA7|1|A|C|1302
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8CA7_008 not in the Motif Atlas
Homologous match to J3_4LFB_009
Geometric discrepancy: 0.1365
The information below is about J3_4LFB_009
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_37047.6
Basepair signature
cWW-cSS-tHW-F-F-F-cWW-cWW-F-cSH-F-F
Number of instances in this motif group
4

Unit IDs

8CA7|1|A|C|1237
8CA7|1|A|A|1238
8CA7|1|A|A|1239
8CA7|1|A|U|1240
8CA7|1|A|G|1241
*
8CA7|1|A|C|1296
8CA7|1|A|G|1297
8CA7|1|A|U|1298
8CA7|1|A|A|1299
8CA7|1|A|G|1300
8CA7|1|A|U|1301
8CA7|1|A|C|1302
8CA7|1|A|C|1303
*
8CA7|1|A|G|1334
8CA7|1|A|U|1335
8CA7|1|A|C|1336
8CA7|1|A|G|1337

Current chains

Chain A
16S rRNA

Nearby chains

Chain G
30S ribosomal protein S7
Chain M
Small ribosomal subunit protein uS13

Coloring options:


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