J3_8CAH_003
3D structure
- PDB id
- 8CAH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- CUA*UUACG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 8CAH|1|2|A|1093
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CAH_003 not in the Motif Atlas
- Homologous match to J3_4V88_034
- Geometric discrepancy: 0.1051
- The information below is about J3_4V88_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_23622.1
- Basepair signature
- cWW-tWW-tWW-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CAH|1|2|C|1037
8CAH|1|2|U|1038
8CAH|1|2|A|1039
*
8CAH|1|2|U|1079
8CAH|1|2|U|1080
8CAH|1|2|A|1081
8CAH|1|2|C|1082
8CAH|1|2|G|1083
*
8CAH|1|2|C|1090
8CAH|1|2|A|1091
8CAH|1|2|A|1092
8CAH|1|2|A|1093
8CAH|1|2|G|1094
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain P
- 40S ribosomal protein S0-A
- Chain a
- 40S ribosomal protein S21-A
- Chain b
- 40S ribosomal protein S22-A
- Chain e
- 40S ribosomal protein S26-A
- Chain f
- 40S ribosomal protein S27-A
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