J3_8CAH_012

3D structure

PDB id

8CAH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of native Otu2-bound ubiquitinated 43S pre-initiation complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGAUUAAG*CGCGCAAAU*AGU

Length

20 nucleotides

Bulged bases

8CAH|1|2|A|47

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CAH_012 not in the Motif Atlas

Homologous match to J3_8P9A_069

Geometric discrepancy: 0.061

The information below is about J3_8P9A_069

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_63856.1

Basepair signature

cWW-cWW-cSW-F-cWW-F-tHH-F-cWW-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8CAH|1|2|A|41
8CAH|1|2|G|42
8CAH|1|2|A|43
8CAH|1|2|U|44
8CAH|1|2|U|45
8CAH|1|2|A|46
8CAH|1|2|A|47
8CAH|1|2|G|48
*
8CAH|1|2|C|431
8CAH|1|2|G|432
8CAH|1|2|C|433
8CAH|1|2|G|434
8CAH|1|2|C|435
8CAH|1|2|A|436
8CAH|1|2|A|437
8CAH|1|2|A|438
8CAH|1|2|U|439
*
8CAH|1|2|A|464
8CAH|1|2|G|465
8CAH|1|2|U|466

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain W

40S ribosomal protein S9-A

Chain c

40S ribosomal protein S23-A

Chain x

RLI1 isoform 1