3D structure

PDB id
8CAI (explore in PDB, NAKB, or RNA 3D Hub)
Description
Streptomycin and Hygromycin B bound to the 30S body
Experimental method
ELECTRON MICROSCOPY
Resolution
2.08 Å

Loop

Sequence
UA*UACCGGUGG*CGG
Length
14 nucleotides
Bulged bases
8CAI|1|A|U|723
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8CAI_006 not in the Motif Atlas
Homologous match to J3_5J7L_003
Geometric discrepancy: 0.0521
The information below is about J3_5J7L_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_11934.4
Basepair signature
cWW-cWW-tWW-cWW-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8CAI|1|A|U|672
8CAI|1|A|A|673
*
8CAI|1|A|U|717
8CAI|1|A|A|718
8CAI|1|A|C|719
8CAI|1|A|C|720
8CAI|1|A|G|721
8CAI|1|A|G|722
8CAI|1|A|U|723
8CAI|1|A|G|724
8CAI|1|A|G|725
*
8CAI|1|A|C|732
8CAI|1|A|G|733
8CAI|1|A|G|734

Current chains

Chain A
16S rRNA

Nearby chains

Chain F
Small ribosomal subunit protein bS6, non-modified isoform
Chain K
Small ribosomal subunit protein uS11
Chain O
Small ribosomal subunit protein uS15
Chain R
Small ribosomal subunit protein bS18
Chain U
Small ribosomal subunit protein bS21

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1071 s