3D structure

PDB id
8CAM (explore in PDB, NAKB, or RNA 3D Hub)
Description
Evernimicin bound to the 50S subunit
Experimental method
ELECTRON MICROSCOPY
Resolution
1.86 Å

Loop

Sequence
CAUC*GUA*UUUAAAG
Length
14 nucleotides
Bulged bases
8CAM|1|a|A|2518, 8CAM|1|a|U|2519
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J3_8CAM_008 not in the Motif Atlas
Homologous match to J3_5J7L_046
Geometric discrepancy: 0.0466
The information below is about J3_5J7L_046
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J3_32601.5
Basepair signature
cWW-tWH-cHW-F-cWW-tSS-F-cWW
Number of instances in this motif group
4

Unit IDs

8CAM|1|a|C|2517
8CAM|1|a|A|2518
8CAM|1|a|U|2519
8CAM|1|a|C|2520
*
8CAM|1|a|G|2545
8CAM|1|a|U|2546
8CAM|1|a|A|2547
*
8CAM|1|a|U|2561
8CAM|1|a|U|2562
8CAM|1|a|U|2563
8CAM|1|a|A|2564
8CAM|1|a|A|2565
8CAM|1|a|A|2566
8CAM|1|a|G|2567

Current chains

Chain a
23S rRNA

Nearby chains

Chain d
Large ribosomal subunit protein uL3
Chain j
Large ribosomal subunit protein uL14

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2433 s