J3_8CBJ_003
3D structure
- PDB id
- 8CBJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CUA*UUACG*CAAAG
- Length
- 13 nucleotides
- Bulged bases
- 8CBJ|1|2|A|1093
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CBJ_003 not in the Motif Atlas
- Geometric match to J3_8C3A_037
- Geometric discrepancy: 0.2045
- The information below is about J3_8C3A_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_95208.1
- Basepair signature
- cWW-tWW-tWW-F-cWW-F-cWW
- Number of instances in this motif group
- 2
Unit IDs
8CBJ|1|2|C|1037
8CBJ|1|2|U|1038
8CBJ|1|2|A|1039
*
8CBJ|1|2|U|1079
8CBJ|1|2|U|1080
8CBJ|1|2|A|1081
8CBJ|1|2|C|1082
8CBJ|1|2|G|1083
*
8CBJ|1|2|C|1090
8CBJ|1|2|A|1091
8CBJ|1|2|A|1092
8CBJ|1|2|A|1093
8CBJ|1|2|G|1094
Current chains
- Chain 2
- 20S pre-ribosomal RNA
Nearby chains
- Chain A
- 40S ribosomal protein S0-A
- Chain V
- 40S ribosomal protein S21-A
- Chain W
- 40S ribosomal protein S22-A
- Chain b
- 40S ribosomal protein S27-A
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