J3_8CBJ_004

3D structure

PDB id

8CBJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCAG*CUAGUAA*UGAUUACG

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CBJ_004 not in the Motif Atlas

Geometric match to J3_8C3A_038

Geometric discrepancy: 0.2102

The information below is about J3_8C3A_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_25303.2

Basepair signature

cWW-tSH-tHW-cSH-cSS-tHH-cSS-tWW-F-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8CBJ|1|2|C|1161
8CBJ|1|2|C|1162
8CBJ|1|2|A|1163
8CBJ|1|2|G|1164
*
8CBJ|1|2|C|1581
8CBJ|1|2|U|1582
8CBJ|1|2|A|1583
8CBJ|1|2|G|1584
8CBJ|1|2|U|1585
8CBJ|1|2|A|1586
8CBJ|1|2|A|1587
*
8CBJ|1|2|U|1609
8CBJ|1|2|G|1610
8CBJ|1|2|A|1611
8CBJ|1|2|U|1612
8CBJ|1|2|U|1613
8CBJ|1|2|A|1614
8CBJ|1|2|C|1615
8CBJ|1|2|G|1616

Current chains

Chain 2

20S pre-ribosomal RNA

Nearby chains

Chain F

40S ribosomal protein S5

Chain Q

40S ribosomal protein S16-A

Chain c

40S ribosomal protein S28-A