J3_8CBJ_010
3D structure
- PDB id
- 8CBJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CACUG*CGUGCUGG*CGAG
- Length
- 17 nucleotides
- Bulged bases
- 8CBJ|1|2|U|1473, 8CBJ|1|2|G|1539
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CBJ_010 not in the Motif Atlas
- Geometric match to J3_4V88_041
- Geometric discrepancy: 0.1737
- The information below is about J3_4V88_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_37047.3
- Basepair signature
- cWW-cSS-cSH-F-tWH-F-cWW-cSH-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
8CBJ|1|2|C|1470
8CBJ|1|2|A|1471
8CBJ|1|2|C|1472
8CBJ|1|2|U|1473
8CBJ|1|2|G|1474
*
8CBJ|1|2|C|1533
8CBJ|1|2|G|1534
8CBJ|1|2|U|1535
8CBJ|1|2|G|1536
8CBJ|1|2|C|1537
8CBJ|1|2|U|1538
8CBJ|1|2|G|1539
8CBJ|1|2|G|1540
*
8CBJ|1|2|C|1571
8CBJ|1|2|G|1572
8CBJ|1|2|A|1573
8CBJ|1|2|G|1574
Current chains
- Chain 2
- 20S pre-ribosomal RNA
Nearby chains
- Chain F
- 40S ribosomal protein S5
- Chain S
- 40S ribosomal protein S18-A
- Chain T
- 40S ribosomal protein S19-A
- Chain Z
- 40S ribosomal protein S25-A
- Chain l
- non-specific serine/threonine protein kinase
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