J3_8CBJ_014
3D structure
- PDB id
- 8CBJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UGA*UAAUA*UA
- Length
- 10 nucleotides
- Bulged bases
- 8CBJ|1|2|U|864
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CBJ_014 not in the Motif Atlas
- Geometric match to J3_4V88_080
- Geometric discrepancy: 0.1195
- The information below is about J3_4V88_080
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_56052.3
- Basepair signature
- cWW-F-cWW-cWW-F
- Number of instances in this motif group
- 6
Unit IDs
8CBJ|1|2|U|633
8CBJ|1|2|G|634
8CBJ|1|2|A|635
*
8CBJ|1|2|U|861
8CBJ|1|2|A|862
8CBJ|1|2|A|863
8CBJ|1|2|U|864
8CBJ|1|2|A|865
*
8CBJ|1|2|U|965
8CBJ|1|2|A|966
Current chains
- Chain 2
- 20S pre-ribosomal RNA
Nearby chains
- Chain H
- 40S ribosomal protein S7-A
- Chain L
- 40S ribosomal protein S11-A
- Chain N
- 40S ribosomal protein S13
- Chain W
- 40S ribosomal protein S22-A
- Chain X
- 40S ribosomal protein S23-A
- Chain b
- 40S ribosomal protein S27-A
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