J3_8CBJ_018
3D structure
- PDB id
- 8CBJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of Otu2-bound cytoplasmic pre-40S ribosome biogenesis complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- UG*UGUC*GAUAA
- Length
- 11 nucleotides
- Bulged bases
- 8CBJ|1|2|A|1321
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CBJ_018 not in the Motif Atlas
- Geometric match to J3_8C3A_085
- Geometric discrepancy: 0.1894
- The information below is about J3_8C3A_085
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_76043.2
- Basepair signature
- cWW-F-F-F-F-tSS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8CBJ|1|2|U|1293
8CBJ|1|2|G|1294
*
8CBJ|1|2|U|1303
8CBJ|1|2|G|1304
8CBJ|1|2|U|1305
8CBJ|1|2|C|1306
*
8CBJ|1|2|G|1318
8CBJ|1|2|A|1319
8CBJ|1|2|U|1320
8CBJ|1|2|A|1321
8CBJ|1|2|A|1322
Current chains
- Chain 2
- 20S pre-ribosomal RNA
Nearby chains
- Chain A
- 40S ribosomal protein S0-A
- Chain C
- 40S ribosomal protein S2
- Chain R
- 40S ribosomal protein S17-A
- Chain a
- 20S-pre-rRNA D-site endonuclease NOB1
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