J3_8CCS_021
3D structure
- PDB id
- 8CCS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.97 Å
Loop
- Sequence
- AAC*GGAC*GUUU
- Length
- 11 nucleotides
- Bulged bases
- 8CCS|1|c|U|1413, 8CCS|1|c|U|1414
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CCS_021 not in the Motif Atlas
- Homologous match to J3_4V88_040
- Geometric discrepancy: 0.117
- The information below is about J3_4V88_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_82365.2
- Basepair signature
- cWW-F-F-F-cWW-cWW
- Number of instances in this motif group
- 4
Unit IDs
8CCS|1|c|A|1336
8CCS|1|c|A|1337
8CCS|1|c|C|1338
*
8CCS|1|c|G|1386
8CCS|1|c|G|1387
8CCS|1|c|A|1388
8CCS|1|c|C|1389
*
8CCS|1|c|G|1412
8CCS|1|c|U|1413
8CCS|1|c|U|1414
8CCS|1|c|U|1415
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 5
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain 7
- Guanine nucleotide-binding protein subunit beta-like protein
- Chain i
- 40S ribosomal protein S5
- Chain s
- 40S ribosomal protein S16-A
- Chain t
- 40S ribosomal protein S17-A
- Chain w
- 40S ribosomal protein S20
Coloring options: