J3_8CCS_032

3D structure

PDB id

8CCS (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-1 pre-translocation (PRE-H1) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

1.97 Å

Loop

Sequence

AGAUGG*CGUUUCAAAGG*CACCAU

Length

23 nucleotides

Bulged bases

8CCS|1|AA|C|1556, 8CCS|1|AA|A|1558, 8CCS|1|AA|A|1580, 8CCS|1|AA|C|1581

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CCS_032 not in the Motif Atlas

Homologous match to J3_9PN5_015

Geometric discrepancy: 0.2127

The information below is about J3_9PN5_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_53783.2

Basepair signature

cWW-tSH-tHW-F-tWW-F-tHS-F-cWW-cWW-F-tWW-F

Number of instances in this motif group

3

Unit IDs

8CCS|1|AA|A|1537
8CCS|1|AA|G|1538
8CCS|1|AA|A|1539
8CCS|1|AA|U|1540
8CCS|1|AA|G|1541
8CCS|1|AA|G|1542
*
8CCS|1|AA|C|1551
8CCS|1|AA|G|1552
8CCS|1|AA|U|1553
8CCS|1|AA|U|1554
8CCS|1|AA|U|1555
8CCS|1|AA|C|1556
8CCS|1|AA|A|1557
8CCS|1|AA|A|1558
8CCS|1|AA|A|1559
8CCS|1|AA|G|1560
8CCS|1|AA|G|1561
*
8CCS|1|AA|C|1579
8CCS|1|AA|A|1580
8CCS|1|AA|C|1581
8CCS|1|AA|C|1582
8CCS|1|AA|A|1583
8CCS|1|AA|U|1584

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain CC

5.8S ribosomal RNA; 5.8S rRNA

Chain EE

60S ribosomal protein L2-A

Chain J

60S ribosomal protein L25

Chain KK

60S ribosomal protein L8-A

Chain QQ

60S ribosomal protein L15-A

Chain V

60S ribosomal protein L37-A