J3_8CDL_005

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

UGAAGUG*CAA*UCUA

Length

14 nucleotides

Bulged bases

8CDL|1|AA|A|1482

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CDL_005 not in the Motif Atlas

Homologous match to J3_8C3A_006

Geometric discrepancy: 0.078

The information below is about J3_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_10154.2

Basepair signature

cWW-tWW-tHW-cWW-tSH-cWW-cWW-F-F

Number of instances in this motif group

3

Unit IDs

8CDL|1|AA|U|1479
8CDL|1|AA|G|1480
8CDL|1|AA|A|1481
8CDL|1|AA|A|1482
8CDL|1|AA|G|1483
8CDL|1|AA|U|1484
8CDL|1|AA|G|1485
*
8CDL|1|AA|C|1857
8CDL|1|AA|A|1858
8CDL|1|AA|A|1859
*
8CDL|1|AA|U|1871
8CDL|1|AA|C|1872
8CDL|1|AA|U|1873
8CDL|1|AA|A|1874

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain D

60S ribosomal protein L19-A

Chain S

60S ribosomal protein L34-A