J3_8CDL_034

3D structure

PDB id

8CDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S S. cerevisiae ribosome with ligands in hybrid-2 pre-translocation (PRE-H2) complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.72 Å

Loop

Sequence

AGACG*CC*GAAAAU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8CDL_034 not in the Motif Atlas

Homologous match to J3_8P9A_058

Geometric discrepancy: 0.0633

The information below is about J3_8P9A_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_12393.2

Basepair signature

cWW-tSH-tHH-F-F-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

8CDL|1|AA|A|1654
8CDL|1|AA|G|1655
8CDL|1|AA|A|1656
8CDL|1|AA|C|1657
8CDL|1|AA|G|1658
*
8CDL|1|AA|C|1791
8CDL|1|AA|C|1792
*
8CDL|1|AA|G|1796
8CDL|1|AA|A|1797
8CDL|1|AA|A|1798
8CDL|1|AA|A|1799
8CDL|1|AA|A|1800
8CDL|1|AA|U|1801

Current chains

Chain AA

25S ribosomal RNA

Nearby chains

Chain EE

60S ribosomal protein L2-A

Chain S

60S ribosomal protein L34-A

Chain b

60S ribosomal protein L43-A