J3_8CDR_020
3D structure
- PDB id
- 8CDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- UCUUAG*CGAGAC*GCAAUA
- Length
- 18 nucleotides
- Bulged bases
- 8CDR|1|c|U|1285
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CDR_020 not in the Motif Atlas
- Homologous match to J3_4V88_039
- Geometric discrepancy: 0.1184
- The information below is about J3_4V88_039
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_47248.1
- Basepair signature
- cWW-F-F-F-F-F-tHH-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8CDR|1|c|U|1283
8CDR|1|c|C|1284
8CDR|1|c|U|1285
8CDR|1|c|U|1286
8CDR|1|c|A|1287
8CDR|1|c|G|1288
*
8CDR|1|c|C|1327
8CDR|1|c|G|1328
8CDR|1|c|A|1329
8CDR|1|c|G|1330
8CDR|1|c|A|1331
8CDR|1|c|C|1332
*
8CDR|1|c|G|1419
8CDR|1|c|C|1420
8CDR|1|c|A|1421
8CDR|1|c|A|1422
8CDR|1|c|U|1423
8CDR|1|c|A|1424
Current chains
- Chain c
- 18S ribosomal RNA
Nearby chains
- Chain 5
- HLJ1_G0030400.mRNA.1.CDS.1
- Chain f
- 40S ribosomal protein S2
- Chain g
- RPS3 isoform 1
- Chain s
- 40S ribosomal protein S16-A
- Chain t
- 40S ribosomal protein S17-A
- Chain w
- 40S ribosomal protein S20
Coloring options: