J3_8CDR_025
3D structure
- PDB id
- 8CDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- CGAUAGCGAACAAGUAC*GGAAAG*CUUG
- Length
- 27 nucleotides
- Bulged bases
- 8CDR|1|AA|U|343, 8CDR|1|AA|A|351, 8CDR|1|CC|U|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CDR_025 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0486
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
8CDR|1|AA|C|340
8CDR|1|AA|G|341
8CDR|1|AA|A|342
8CDR|1|AA|U|343
8CDR|1|AA|A|344
8CDR|1|AA|G|345
8CDR|1|AA|C|346
8CDR|1|AA|G|347
8CDR|1|AA|A|348
8CDR|1|AA|A|349
8CDR|1|AA|C|350
8CDR|1|AA|A|351
8CDR|1|AA|A|352
8CDR|1|AA|G|353
8CDR|1|AA|U|354
8CDR|1|AA|A|355
8CDR|1|AA|C|356
*
8CDR|1|AA|G|363
8CDR|1|AA|G|364
8CDR|1|AA|A|365
8CDR|1|AA|A|366
8CDR|1|AA|A|367
8CDR|1|AA|G|368
*
8CDR|1|CC|C|21
8CDR|1|CC|U|22
8CDR|1|CC|U|23
8CDR|1|CC|G|24
Current chains
- Chain AA
- 25S ribosomal RNA
- Chain CC
- 5.8S ribosomal RNA
Nearby chains
- Chain GG
- 60S ribosomal protein L4-A
- Chain K
- 60S ribosomal protein L26-A
- Chain V
- 60S ribosomal protein L37-A
- Chain X
- 60S ribosomal protein L39
Coloring options: