J3_8CDR_027
3D structure
- PDB id
- 8CDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- AUGAAAAGAAC*GAGUGAAAAAGUACG*CU
- Length
- 28 nucleotides
- Bulged bases
- 8CDR|1|AA|A|398, 8CDR|1|AA|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CDR_027 not in the Motif Atlas
- Homologous match to J3_8C3A_049
- Geometric discrepancy: 0.0742
- The information below is about J3_8C3A_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_91149.1
- Basepair signature
- cWW-cWS-tSH-F-tWH-cSS-cWW-tSS-tSH-tSH-tWW-tHH-tWH-tWW-F-F-cSS-F-cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8CDR|1|AA|A|369
8CDR|1|AA|U|370
8CDR|1|AA|G|371
8CDR|1|AA|A|372
8CDR|1|AA|A|373
8CDR|1|AA|A|374
8CDR|1|AA|A|375
8CDR|1|AA|G|376
8CDR|1|AA|A|377
8CDR|1|AA|A|378
8CDR|1|AA|C|379
*
8CDR|1|AA|G|390
8CDR|1|AA|A|391
8CDR|1|AA|G|392
8CDR|1|AA|U|393
8CDR|1|AA|G|394
8CDR|1|AA|A|395
8CDR|1|AA|A|396
8CDR|1|AA|A|397
8CDR|1|AA|A|398
8CDR|1|AA|A|399
8CDR|1|AA|G|400
8CDR|1|AA|U|401
8CDR|1|AA|A|402
8CDR|1|AA|C|403
8CDR|1|AA|G|404
*
8CDR|1|CC|C|19
8CDR|1|CC|U|20
Current chains
- Chain AA
- 25S ribosomal RNA
- Chain CC
- 5.8S ribosomal RNA
Nearby chains
- Chain B
- 60S ribosomal protein L17-A
- Chain GG
- 60S ribosomal protein L4-A
- Chain K
- 60S ribosomal protein L26-A
- Chain X
- 60S ribosomal protein L39
Coloring options: