J3_8CDR_028
3D structure
- PDB id
- 8CDR (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Translocation intermediate 2 (TI-2) of 80S S. cerevisiae ribosome with ligands and eEF2 in the presence of sordarin
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.04 Å
Loop
- Sequence
- UC*GAGGACUGCG*CAAGGA
- Length
- 18 nucleotides
- Bulged bases
- 8CDR|1|AA|A|607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8CDR_028 not in the Motif Atlas
- Homologous match to J3_8P9A_048
- Geometric discrepancy: 0.0689
- The information below is about J3_8P9A_048
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_86133.1
- Basepair signature
- cWW-cWW-F-F-F-cWS-F-cWW-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8CDR|1|AA|U|502
8CDR|1|AA|C|503
*
8CDR|1|AA|G|588
8CDR|1|AA|A|589
8CDR|1|AA|G|590
8CDR|1|AA|G|591
8CDR|1|AA|A|592
8CDR|1|AA|C|593
8CDR|1|AA|U|594
8CDR|1|AA|G|595
8CDR|1|AA|C|596
8CDR|1|AA|G|597
*
8CDR|1|AA|C|606
8CDR|1|AA|A|607
8CDR|1|AA|A|608
8CDR|1|AA|G|609
8CDR|1|AA|G|610
8CDR|1|AA|A|611
Current chains
- Chain AA
- 25S ribosomal RNA
Nearby chains
- Chain GG
- 60S ribosomal protein L4-A
- Chain II
- 60S ribosomal protein L6-A
- Chain JJ
- 60S ribosomal protein L7-A
- Chain Q
- 60S ribosomal protein L32
Coloring options: